EBI-FGPT-FuzzyRecogniser The module EBI::FGPT::FuzzyRecogniser takes in the constructor an ontology file (OWL/OBO/OMIM/MeSH) and parses it into an internal table of ontology terms (type of EBI::FGPT::FuzzyRecogniser::OntologyTerm). The module contains the find_match method which finds the best match for the supplied term in the given ontology. This can be then queried for ->match_similarity(), ->matched_value(), ->matched_label(), and ->matched_accession(). The best match is based on the n-grams similarity metric. INSTALLATION Use: perl Build.PL ./Build ./Build test ./Build install DEPENDENCIES Moose IO::File; Getopt::Long; GO::Parser; OWL::Simple::Parser 1.00; MeSH::Parser::ASCII 0.02; Bio::Phenotype::OMIM::OMIMparser; EBI::FGPT::FuzzyRecogniser::OntologyTerm; EBI::FGPT::FuzzyRecogniser::OntologyTerm::Annotation; EBI::FGPT::FuzzyRecogniser::OntologyTerm::Label; EBI::FGPT::FuzzyRecogniser::OntologyTerm::Synonym; Log::Log4perl IO::Handle; Benchmark List::Util Data::Dumper; DOCUMENTATION After installing, you can find documentation modules and scripts with the perldoc command, e.g.: perldoc EBI-FGPT-FuzzyRecogniser or visit the respective page on CPAN COPYRIGHT AND LICENSE Copyright [2011] EMBL - European Bioinformatics Institute Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.