Package: viennarna Version: 1.5beta Revision: 15 Source: http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-%v.tar.gz Source-MD5: f8737e07fc82ccd130cc30bfd09ccca5 SourceDirectory: ViennaRNA-1.5 NoSetCPPFLAGS: true NoSetLDFLAGS: true ConfigureParams: --mandir=%p/share/man --infodir=%p/share/info Depends: perl586-core | system-perl586 UpdatePOD: true Description: RNA structural prediction DescDetail: << The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures. The package allows you to - predict minimum free energy secondary structures - calculate the partition function for the ensemble of structures - calculate suboptimal structures in a given energy range - predict consensus secondary sctructures from a multiple sequence alignment - predict melting curves - search for sequences folding into a given structure - compare two secondary structures - The package includes a Perl5 module that gives access to almost all functions of the C library from Perl. - The following executables are provided: RNAfold predict secondary structures RNAsubopt calulate suboptimal structures in a given energy range RNAeval evaluate energy for given sequence and structure RNAheat calculate melting curves RNAdistance compare secondary structures RNApdist compare ensembles of secondary structures RNAinverse find sequences folding into given structures AnalyseSeqs analyse sequence data AnalyseDists analyse distance matrices - For more detailed information on these please enter the command man RNA . << InstallScript: << #!/bin/zsh -efv perl -pi.bak -e 's|/usr/local|%p/share|g' Perl/Makefile.perl perl -pi.bak -e 's;/usr/share/man;%p/share/man;g' Perl/Makefile.perl mkdir -p %i/share/man/man3/ make install DESTDIR=%d INSTALLPRIVLIB=%p/lib/perl5/5.8.1/ INSTALLARCHLIB=%p/lib/perl5/5.8.1/darwin-thread-multi-2level/ INSTALLSITELIB=%p/lib/perl5/5.8.1/ INSTALLSITEARCH=%p/lib/perl5/5.8.1/darwin-thread-multi-2level INSTALLSCRIPT=%p/share/viennarna/scripts << DocFiles: AUTHORS ChangeLog COPYING INSTALL INSTALL.configure NEWS README THANKS License: GPL Homepage: http://www.tbi.univie.ac.at/~ivo/RNA/ Maintainer: W. G. Scott