diff -Nurd -x'*~' wwwblast.orig/Src/Makefile wwwblast/Src/Makefile
--- wwwblast.orig/Src/Makefile	2003-11-21 16:10:56.000000000 -0500
+++ wwwblast/Src/Makefile	2006-03-30 02:13:58.000000000 -0500
@@ -1,12 +1,12 @@
 # Set the NCBI variable to your local path to the NCBI toolkit!
 #NCBI = 
 
-NCBI_INCDIR = $(NCBI)/include
-NCBI_ALTLIB = $(NCBI)/altlib
-NCBI_LIBDIR = $(NCBI)/lib
+#NCBI_INCDIR = $(NCBI)/include
+#NCBI_ALTLIB = $(NCBI)/altlib
+#NCBI_LIBDIR = $(NCBI)/lib
 
-NCBI_OTHERLIBS = -lm
-THREAD_LIBS = -lpthread
+#NCBI_OTHERLIBS = -lm
+#THREAD_LIBS = -lpthread
 
 # Uncomment the line(s) relevant to your platform below:
 
@@ -15,8 +15,8 @@
 # Solaris Sparc
 #NCBI_OTHERLIBS += -lposix4 -lresolv -lsocket -lrpcsvc -lnsl
 # MacOS
-#NCBI_OTHERLIBS = -lc
-#THREAD_LIBS =
+NCBI_OTHERLIBS = -lc
+THREAD_LIBS =
 
 #
 CC=cc 
@@ -46,15 +46,15 @@
 LIBS = $(NCBI_LIBDIR)
 DEBUG_FLAG = -O
 # For MacOS, use the following line:
-#DEBUG_FLAG = -O2 -g
+DEBUG_FLAG = -O2 -g
 
-OBJ_FILES = wwwbutl.c $(LIBS)/ncbithr.o
+OBJ_FILES = wwwbutl.c $(LIBS)/ncbithr.o txalign.o xmlblast.o salogif.o
 
 #  Defines: 
 #  NCBI_CLIENT_SERVER - full NCBI Client/server including BLAST search
 #  NCBI_ENTREZ_CLIENT - Client server for gi/accession lookups
 
-INCDIR = -I. -I$(NCBI_INCDIR)
+INCDIR = -I. -I../../../api -I../../../tools -I../../../desktop -I$(NCBI_INCDIR)
 
 # Additional include path for internal NCBI BLAST 2 sequences only.
 # Comment out for standalone
@@ -63,17 +63,17 @@
 
 CFLAGS = -c $(DEBUG_FLAG) $(INCDIR)
 #For MacOS, add the following line:
-#CFLAGS += -no-cpp-precomp -Wno-long-double
+CFLAGS += -no-cpp-precomp -Wno-long-double
  
 # For standalone model
 LDFLAGS = $(DEBUG_FLAG) $(INCDIR)
 #For MacOS, add the following line:
-#LDFLAGS += -framework CoreServices
+LDFLAGS += -framework CoreServices
 
 # Use client/server for gi/accession lookups
 LDFLAGS_CS = $(DEBUG_FLAG) $(INCDIR) -DNCBI_ENTREZ_CLIENT
 #For MacOS, add the following line:
-#LDFLAGS_CS += -framework CoreServices 
+LDFLAGS_CS += -framework CoreServices 
 
 # For full NCBI Client-server model
 #CFLAGS += -DNCBI_CLIENT_SERVER
diff -Nurd -x'*~' wwwblast.orig/Src/viewgif.c wwwblast/Src/viewgif.c
--- wwwblast.orig/Src/viewgif.c	2003-07-15 13:42:19.000000000 -0400
+++ wwwblast/Src/viewgif.c	2006-03-30 02:17:38.000000000 -0500
@@ -1,6 +1,8 @@
 #include <signal.h>
 #include <fcntl.h>
 #include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
 
 static void SigAlrmHandler(int);
 static void SigTermHandler(int);
diff -Nurd -x'*~' wwwblast.orig/index.html wwwblast/index.html
--- wwwblast.orig/index.html	2002-08-06 15:03:51.000000000 -0400
+++ wwwblast/index.html	2006-03-30 01:59:16.000000000 -0500
@@ -9,20 +9,15 @@
 
 <UL>
 
-<LI> <A HREF=blast.html>Regular BLAST without client-server support</A>
-<LI> <A HREF=blast_cs.html>Regular BLAST with client-server support</A>
+<LI> <A HREF=blast.html>Regular BLAST</A>
 
-<LI> <A HREF=psiblast.html>PSI/PHI BLAST without client-server support</A>
-<LI> <A HREF=psiblast_cs.html>PSI/PHI BLAST with client-server support</A>
+<LI> <A HREF=psiblast.html>PSI/PHI BLAST</A>
 
-<LI> <A HREF=megablast.html>Mega BLAST without client-server support</A>
-<LI> <A HREF=megablast_cs.html>Mega BLAST with client-server support</A>
+<LI> <A HREF=megablast.html>Mega BLAST</A>
 
-<LI> <A HREF=rpsblast.html>RPS BLAST without client-server support</A>
-<LI> <A HREF=rpsblast_cs.html>RPS BLAST with client-server support</A>
+<LI> <A HREF=rpsblast.html>RPS BLAST</A>
 
-<LI> <A HREF=wblast2.html>BLAST 2 sequences without client-server support</A>
-<LI> <A HREF=wblast2_cs.html>BLAST 2 sequences with client-server support</A>
+<LI> <A HREF=wblast2.html>BLAST 2 sequences</A>
 
 <LI> <A HREF=readme.html>Readme file</A>