Package: bwa Version: 0.7.17 Revision: 1 Description: Burrows-Wheeler Aligner License: GPL Maintainer: Hanspeter Niederstrasser Source: mirror:sourceforge:bio-bwa/%n-%v.tar.bz2 Source-Checksum: SHA256(de1b4d4e745c0b7fc3e107b5155a51ac063011d33a5d82696331ecf4bed8d0fd) CompileScript: << make << InstallScript: << mkdir %i/bin mkdir -p %i/share/man/man1 install -m 755 bwa qualfa2fq.pl xa2multi.pl %i/bin install -m 644 bwa.1 %i/share/man/man1 << DocFiles: COPYING ChangeLog NEWS.md README.md Homepage: http://bio-bwa.sourceforge.net/ DescDetail: << Software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high- quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads. Li H. and Durbin R. (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics, 25:1754-60. [PMID: 19451168] Li H. and Durbin R. (2010) Fast and accurate long-read alignment with Burrows-Wheeler Transform. Bioinformatics, Epub. [PMID: 20080505] <<