Info2: << Package: cd-hit Version: 4.8.1-2019-0228 Revision: 3 Type: gcc (11) Description: Sequence clustering software License: GPL Maintainer: Hanspeter Niederstrasser Depends: << gcc%type_pkg[gcc]-shlibs << BuildDepends: << gcc%type_pkg[gcc]-compiler << Source: https://github.com/weizhongli/cdhit/releases/download/V4.8.1/%n-v%v.tar.gz Source-Checksum: SHA256(26172dba3040d1ae5c73ff0ac6c3be8c8e60cc49fc7379e434cdf9cb1e7415de) SourceDirectory: %n-v%v UseMaxBuildJobs: false GCC: 4.0 CompileScript: << # yes, LDFLAGS has '-o' because upstream was that way. make openmp=yes CC=gcc-fsf-%type_pkg[gcc] CXX=g++-fsf-%type_pkg[gcc] LDFLAGS="-lstdc++ -lz -o" << InstallScript: << mkdir -p %i/bin make install PREFIX=%i/bin << DocFiles: ChangeLog README doc/cdhit-user-guide.pdf Homepage: http://cd-hit.org/ DescDetail: << CD-HI/CD-HIT clusters protein sequence database at high sequence identity threshold. This program can remove the high sequence redundance efficiently. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. "CD-HIT: a fast program for clustering and comparing large sets of protein or nucleotide sequences", Weizhong Li & Adam Godzik. Bioinformatics, (2006) 22:1658-1659 "CD-HIT: accelerated for clustering the next generation sequencing data", Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu & Weizhong Li. Bioinformatics, (2012) 28:3150-3152 << <<