Package: microbiomeutil Version: 20110519 Revision: 1 Description: Microbiome analysis tools License: BSD Maintainer: Hanspeter Niederstrasser Source: mirror:sourceforge:microbiomeutil/microbiomeutil-r%v.tgz Source-Checksum: SHA256(9233de80ea57bfb9e9371cbe7e3bfad2d4a51168fddaf60fa144c4046c80d823) CompileScript: << make << InfoTest: << TestDepends: cdbfasta TestScript: << #!/bin/sh -ev make -j1 test || exit 2 ### need to clean out all the generated files created during InfoTest pushd ChimeraSlayer/sample_data make clean popd pushd NAST-iEr/sample_data make clean rm formatdb.log popd pushd WigeoN/sample_data make clean popd pushd RESOURCES make clean popd << << InstallScript: << #!/bin/sh -ev mkdir -p %i/share/%n/doc install -m 644 docs/microbiomeutil.{asciidoc,html} %i/share/%n/doc cp -Rp docs/images %i/share/%n/doc/ mkdir -p %i/lib/%n cp -Rp ChimeraSlayer %i/lib/%n cp -Rp NAST-iEr %i/lib/%n cp -Rp WigeoN %i/lib/%n cp -Rp RESOURCES %i/lib/%n << DocFiles: README Homepage: http://microbiomeutil.sourceforge.net/ DescDetail: << Tools from the Broad Institute for analysing microbiome data. Includes: ChimeraSlayer NAST-iEr WigeoN 16S reference sequences Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Haas BJ, Gevers D, Earl A, Feldgarden M, Ward DV, Giannokous G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methe B, Desantis TZ, Petrosino JF, Knight R, Birren BW. Genome Res. 2011 Mar;21(3):494-504. Epub 2011 Jan 6. << DescPackaging: << TreeChopper is not included because it needs bioperl, which is perl- varianted. Including bioperl would necessitate dist-varianting this pkg. AmosCmp16Spipeline is not included because it requires modification of other tools that might possibly be installed by Fink in the future. <<