Package: tabix
# Old standalone version. tabix is now included as part of libhts packages.
Version: 0.2.6
Revision: 1
# Do not propagate past 10.12
Distribution: 10.9, 10.10, 10.11, 10.12
Description: Indexer for TAB-delimited genome files
License: BSD
Maintainer: Hanspeter Niederstrasser <nieder@users.sourceforge.net>
Source: mirror:sourceforge:samtools/%n-%v.tar.bz2
Source-Checksum: SHA256(e4066be7101bae83bec62bc2bc6917013f6c2875b66eb5055fbb013488d68b73)
CompileScript: <<
	make
<<
InstallScript: <<
	#!/bin/sh -ev
	mkdir -p %i/bin
		install -m 0755 tabix %i/bin
	mkdir -p %i/share/man/man1
		install -m 0644 tabix.1 %i/share/man/man1
	mkdir -p %i/share/%n/examples
		install -m 0644 example.gtf.gz* %i/share/%n/examples
<<
DocFiles: ChangeLog NEWS tabix.tex
Homepage: http://samtools.sourceforge.net/
DescDetail: <<
Tabix indexes a TAB-delimited genome position file in.tab.bgz and 
creates an index file in.tab.bgz.tbi when region is absent from the 
command-line. The input data file must be position sorted and 
compressed by bgzip which has a gzip(1) like interface. After 
indexing, tabix is able to quickly retrieve data lines overlapping 
regions specified in the format "chr:beginPos-endPos". Fast data 
retrieval also works over network if URI is given as a file name 
and in this case the index file will be downloaded if it is not 
present locally.
<<