Package: wise2
Version: 2.4.1
Revision: 1
Description: Intelligent algorithms for DNA searches
License: GPL
### free for anyone to take over after contacting me
Maintainer: Hanspeter Niederstrasser <nieder@users.sourceforge.net>

BuildDepends: <<
	glib2-dev,
	pkgconfig
<<
Depends: <<
	glib2-shlibs
<<
#Source: ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise%v.tar.gz
Source: http://www.ebi.ac.uk/~birney/wise2/wise%v.tar.gz
Source-Checksum: SHA256(240e2b12d6cd899040e2efbcb85b0d3c10245c255f3d07c1db45d0af5a4d5fa1)
PatchScript: <<
	## 10.7 has a getline function, but it doesn't function identically to the included
	## getline, so instead of patching to use system-getline, rename the included
	## function to eliminate conflicting declarations
	perl -pi -e 's|getline|wise2_getline|g' src/HMMer2/sqio.c
	### uses dead glib-config to get glib cflags and libs, so patch to use pkg-config
	perl -pi -e 's|glib-config --cflags|pkg-config --cflags glib-2.0|g; s|glib-config --libs|pkg-config --libs glib-2.0|g' `grep -lr glib-config *`
<<
CompileScript: <<
#!/bin/sh -ex
 cd src
 export PKG_CONFIG_PATH=%p/lib/glib-2.0/pkgconfig-strict:$PKG_CONFIG_PATH
 make all
 export WISECONFIGDIR=%b/wisecfg/
 make test
<<

InstallScript: <<
  mkdir -p %i/bin
  mv src/bin/* %i/bin

  mkdir -p %i/share/wise2
  mv wisecfg test_data %i/share/wise2/

  mkdir -p %i/lib
  cp src/base/libwisebase.a %i/lib
  cp src/dynlibsrc/libdyna.a %i/lib
  cp src/dynlibsrc/libdyna_glib.a %i/lib
  cp src/external/mott/libmott.a %i/lib
  cp src/models/libmodel.a %i/lib
  cp src/socket/libwisesocket.a %i/lib
  cp src/HMMer2/libhmmer.a %i/lib

  mkdir -p %i/include
  mv src/api/include/*.h %i/include
  cat src/api/include/dyna.head src/dynlibsrc/*api.t src/dynlibsrc/*api.h > %i/include/dyna_api.h
  cat src/api/include/models.head src/models/*api.t src/models/*api.h > %i/include/model_api.h  
<<

RuntimeVars: <<
  WISECONFIGDIR: %p/share/wise2/wisecfg
<<

SplitOff: <<
  Package: %N-dev
  DocFiles: INSTALL README LICENSE
  Files: <<
   lib/*.a
   include
  <<
  BuildDependsOnly: True
<<

DocFiles: INSTALL README LICENSE
DescPackaging: <<
	Former Maintainer: Koen van der Drift <driftkop@users.sourceforge.net>

	This is a program and static-only libraries.
<<
Homepage: http://www.ebi.ac.uk/Wise2/
DescPort: <<
o rename getline() to wise2_getline() to avoid conflicting declarations with 10.7 getline()
o Change from obsolete glib-config to pkg-config
<<
DescDetail: <<
Wise2 is a package focused on comparisons of biopolymers, commonly DNA
sequence and protein sequence.
<<